Module function names¶
Category |
Function name |
Description |
Type |
In GUI |
|---|---|---|---|---|
Cell Behaviour |
behaviourAnalysis |
Define and extract cellular behaviour |
Live |
Y |
Cleanup images |
cleanupImages |
Autofluorecense, overspill and drift correction |
Live/Static |
Y |
Population Clustering |
clustPopulations |
Extract populations by clustering |
Live/Static |
Y |
Region Clustering |
clustRegions |
Define cellular regions |
Static |
Y |
Population Gating |
gatePopulations |
Gate populations with histocytometry |
Static |
Y |
High Performance Computing |
hpc |
Convencience functions for HPC access |
NA |
N |
Import Flow Files |
importFlow |
Import flow files |
Flow |
Y |
Import Images |
importImages |
Generate OME-ZARR from images |
Live/Static |
Y |
Launchpad |
launchpad |
Convenience layer to manage function tasks |
NA |
N |
Mediaflux in Settings |
mflux |
Use Mediaflux for data storage |
NA |
Y |
Pixel Classification |
pixcl |
Use pixel classification |
Static |
Y |
Cell Segmentation |
segment |
Segment images to extract cell masks |
Live/Static |
Y |
Signal Analysis |
signalAnalysis |
Extract signals along tracks |
Live |
Y |
Spatial Analysis |
spatialAnalysis |
Quantify spatial organisation of cells |
Live/Static |
Y |
Cell Tracking |
tracking |
Track cells |
Live |
Y |
Train models |
trainModels |
Train models based on user data |
Live/Static |
Y |