Module function names

Module functions and their navigation name

Category

Function name

Description

Type

In GUI

Cell Behaviour

behaviourAnalysis

Define and extract cellular behaviour

Live

Y

Cleanup images

cleanupImages

Autofluorecense, overspill and drift correction

Live/Static

Y

Population Clustering

clustPopulations

Extract populations by clustering

Live/Static

Y

Region Clustering

clustRegions

Define cellular regions

Static

Y

Population Gating

gatePopulations

Gate populations with histocytometry

Static

Y

High Performance Computing

hpc

Convencience functions for HPC access

NA

N

Import Flow Files

importFlow

Import flow files

Flow

Y

Import Images

importImages

Generate OME-ZARR from images

Live/Static

Y

Launchpad

launchpad

Convenience layer to manage function tasks

NA

N

Mediaflux in Settings

mflux

Use Mediaflux for data storage

NA

Y

Pixel Classification

pixcl

Use pixel classification

Static

Y

Cell Segmentation

segment

Segment images to extract cell masks

Live/Static

Y

Signal Analysis

signalAnalysis

Extract signals along tracks

Live

Y

Spatial Analysis

spatialAnalysis

Quantify spatial organisation of cells

Live/Static

Y

Cell Tracking

tracking

Track cells

Live

Y

Train models

trainModels

Train models based on user data

Live/Static

Y