.. _module_function_names:

Module function names
============

.. list-table:: Module functions and their navigation name
   :widths: 25 25 35 10 5
   :header-rows: 1

   * - Category
     - Function name
     - Description
     - Type
     - In GUI
   * - Cell Behaviour
     - behaviourAnalysis
     - Define and extract cellular behaviour
     - Live
     - Y
   * - Cleanup images
     - cleanupImages
     - Autofluorecense, overspill and drift correction
     - Live/Static
     - Y
   * - Population Clustering
     - clustPopulations
     - Extract populations by clustering
     - Live/Static
     - Y
   * - Region Clustering
     - clustRegions
     - Define cellular regions
     - Static
     - Y
   * - Population Gating
     - gatePopulations
     - Gate populations with histocytometry
     - Static
     - Y
   * - High Performance Computing
     - hpc
     - Convencience functions for HPC access
     - NA
     - N
   * - Import Flow Files
     - importFlow
     - Import flow files
     - Flow
     - Y
   * - Import Images
     - importImages
     - Generate OME-ZARR from images
     - Live/Static
     - Y
   * - Launchpad
     - launchpad
     - Convenience layer to manage function tasks
     - NA
     - N
   * - Mediaflux in Settings
     - mflux
     - Use Mediaflux for data storage
     - NA
     - Y
   * - Pixel Classification
     - pixcl
     - Use pixel classification
     - Static
     - Y
   * - Cell Segmentation
     - segment
     - Segment images to extract cell masks
     - Live/Static
     - Y
   * - Signal Analysis
     - signalAnalysis
     - Extract signals along tracks
     - Live
     - Y
   * - Spatial Analysis
     - spatialAnalysis
     - Quantify spatial organisation of cells
     - Live/Static
     - Y
   * - Cell Tracking
     - tracking
     - Track cells
     - Live
     - Y
   * - Train models
     - trainModels
     - Train models based on user data
     - Live/Static
     - Y