.. Cecelia

Welcome to Cecelia
===================

Become an image analysis ninja!
++++++++++++++++++++++++++++++

.. image:: _images/cciaLogo.png
   :width: 600
   

Quantitative analysis of complex static (2D and 3D) and dynamic (4D) images often relies upon several disconnected software packages and/or the use of expensive commercial software packages. We have recently developed a software package for the complete analysis of all types of biological imaging data. The goal of Cecelia is to simplify image analysis for biologists within a single user interface that is built around `R/shiny` and `python/napari`.


If case you need help to set up or use the program, file an issue on `Github <https://github.com/schienstockd/cecelia/issues>`_.

.. toctree::
  :maxdepth: 2
  :caption: Contents:
  
  installation
  overview
  walkthrough
  tutorial
  missions
  access_data_rmarkdown
  create_custom_module
  module_function_names
  population_types
  input_widget_types
  others
  changelog


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

.. role:: underline
  :class: underline